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Programmed ribosomal frameshifting in decoding the SARS-CoV genome

Identifieur interne : 004710 ( Main/Exploration ); précédent : 004709; suivant : 004711

Programmed ribosomal frameshifting in decoding the SARS-CoV genome

Auteurs : Pavel V. Baranov [États-Unis, Irlande (pays)] ; Clark M. Henderson [États-Unis] ; Christine B. Anderson [États-Unis] ; Raymond F. Gesteland [États-Unis] ; John F. Atkins [États-Unis, Irlande (pays)] ; Michael T. Howard [États-Unis]

Source :

RBID : PMC:7111862

Descripteurs français

English descriptors

Abstract

Programmed ribosomal frameshifting is an essential mechanism used for the expression of orf1b in coronaviruses. Comparative analysis of the frameshift region reveals a universal shift site U_UUA_AAC, followed by a predicted downstream RNA structure in the form of either a pseudoknot or kissing stem loops. Frameshifting in SARS-CoV has been characterized in cultured mammalian cells using a dual luciferase reporter system and mass spectrometry. Mutagenic analysis of the SARS-CoV shift site and mass spectrometry of an affinity tagged frameshift product confirmed tandem tRNA slippage on the sequence U_UUA_AAC. Analysis of the downstream pseudoknot stimulator of frameshifting in SARS-CoV shows that a proposed RNA secondary structure in loop II and two unpaired nucleotides at the stem I–stem II junction in SARS-CoV are important for frameshift stimulation. These results demonstrate key sequences required for efficient frameshifting, and the utility of mass spectrometry to study ribosomal frameshifting.


Url:
DOI: 10.1016/j.virol.2004.11.038
PubMed: 15680415
PubMed Central: 7111862


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

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<p>Programmed ribosomal frameshifting is an essential mechanism used for the expression of
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{{Explor lien
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}}

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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:15680415" \
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